With the new integration with QuickBooks Desktop you can now upload and extract all your invoice/bill/receipts and publish them directly to the company file. If you only require Bank statement data extracted through AutoEntry (not invoices), there is no need to download or install the AutoEntry Sync App. See here for details on importing your statement data.
As it's a desktop application the invoice/bill images do not publish through to QuickBooks Desktop but don't forget, as long as there is an active subscription, all images are stored in AutoEntry for 7 years which will give you a full digital backup of all your transactions.
Please see the following page for how the integration works and getting set up: